If you have the misfortune of having to troubleshoot and repair boot issues on a virtual machine after a physical host crash, these two commands might help you.

First of all, try to get into the advanced settings on boot (it should be the F11 key), or after a while Windows (Server or 10/11) might automatically go into the menu when it cannot boot from disk. Alternatively a Windows ISO image can be used.

Once in the advanced settings, run the good old checkdisk command:

chkdsk /f C:

After completion, restart the VM and check if you are able to boot. If the issue persists, try restoring the registry database (once again through the advanced settings or a Windows ISO). A scheduled task regularly backs up the registry and puts it the folder C:\Windows\System32\config\Regbak.

copy C:\windows\system32\config\RegBack\* C:\windows\system32\config

Restart the VM and check if you are able to boot into Windows. If you still have issues, you should consider restoring from a backup (it sucks but sometimes it is unavoidable).

A while ago I made a blog post about Differencing Disks in Hyper-V. If you mainly work with Hyper-V, you should check it out: https://www.ajni.it/2019/10/hyper-v-create-a-master-vhdx-to-save-tons-of-space/. VMware Workstation utilizes a similar concept, called Linked Clones.

Linked Clones use a read-only disk as a reference, changes made to the VM are written into a separate writable disk. This technique allows us to save disk space and create a lot of VMs. Changes, at least in the beginning after the OS installation, are very small.

Install Windows 10 or Windows Server along with VMware Tools and then Sysprep your VM.

Now the template can be "cloned"

In VMware, a Differencing Disk is called Linked Clone. Just like in a snapshot, a linked clone uses a base read-only disk and saves changes into second, writable disk.

Now a name for the new VM can be inserted.

After booting up the new VM, we can see that the writable disk only consumes 7MB. 4GB are used for the memory state.

This feature is awesome for home labs. You can create multiple VMs off of that single base disk. In a lab, changes are usually very small, so you can save a ton of space using this method. I would not recommend updating your system through Windows Updates or enabling Bitlocker.

If for some reason the base disk is corrupt or lost though, every VM will be affected.